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Genome-Wide Association Studies
Hardcover
Series: Methods in Molecular Biology, Book 2481
ISBN13: 9781071622360
Publisher: Humana Pr
Published: Jun 1 2022
Pages: 371
Weight: 1.95
Height: 0.88 Width: 7.00 Depth: 10.00
Language: English
Part I: Reviews and Overviews
1. Designing a Genome-Wide Association Study: Main Steps and Critical Decisions
François Belzile and Davoud Torkamaneh
2. Preparation and Curation of Phenotypic Datasets
Santiago Alvarez Prado, Fernando Hernandez, Ana Laura Achilli, and Agustina Amelong
3. Genotyping Platforms for Genome-Wide Association Studies: Options and Practical Considerations
David L. Hyten
4. Genome-Wide Association Study Statistical Models: A Review
Mohsen Yoosefzadeh-Najafabadi, Milad Eskandari, Francois Belzile, and Davoud Torkamaneh
5. Interpretation of Manhattan Plots and Other Outputs of Genome-Wide Association Studies
Jiabo Wang, Jianming Yu, Alexander E. Lipka, and Zhiwu Zhang
Part II: Phenotypic Data for GWAS
6. Preparation and Curation of Multi-Year, Multi-Location, Multi-Trait Datasets
Amina Abed and Zakaria Kehel
7. Development, Preparation, and Curation of High-Throughput Phenotypic Data for Genome-Wide Association Studies: A Sample Pipeline in R
Pasquale Tripodi
8. Preparation and Curation of Omics Data for Genome-Wide Association Studies
Feng Zhu, Alisdair R. Fernie, and Federico Scossa
Part III: Genotypic Data and Assessment of Population Structure
9. Producing High-Quality Single Nucleotide Polymorphism Data for Genome-Wide Association Studies
Philipp E. Bayer, Mitchell Gill, Monica F. Danilevicz, and David Edwards
10. A Practical Guide to Using Structural Variants for Genome-Wide Association Studies
Marc-André Lemay and Sidiki Malle
11. Data Integration, Imputation, and Meta-Analysis for Genome-Wide Association Studies
Reem Joukhadar and Hans D. Daetwyler
12. Population Structure and Relatedness for Genome-Wide Association Studies
Sidiki Malle
Part IV: Bioinformatics Tools for GWAS
13. Performing Genome-Wide Association Studies with Multiple Models Using GAPIT
Jiabo Wang, You Tang, and Zhiwu Zhang
14. Performing Genome-Wide Association Studies Using rMVP
Xiaolei Liu, Lilin Yin, Haohao Zhang, Xinyun Li, and Shuhong Zhao
Part V: Identification of Candidate Genes and Validation
15. Identification and Validation of Candidate Genes from Genome-Wide Association Studies
Elise Albert and Christopher Sauvage
16. Bipare
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