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Yeast Systems Biology: Methods and Protocols
Paperback
Series: Methods in Molecular Biology, Book 759
ISBN13: 9781493961351
Publisher: Humana
Published: Aug 23 2016
Pages: 535
Weight: 2.08
Height: 1.12 Width: 7.00 Depth: 10.00
Language: English
Part I: Yeast Systems Biology
1. Yeast Systems Biology: The Challenge of Eukaryotic Complexity
Juan I. Castrillo and Stephen G. Oliver
Part II: Experimental Systems Biology: High-Throughput Genome-Wide and Molecular Studies
2. Saccharomyces cerevisiae: Gene Annotation and Genome Variability, State-of-the-Art Through Comparative Genomics
Ed Louis
3. Genome-Wide Measurement of Histone H3 Replacement Dynamics in Yeast
Oliver J. Rando
4. Genome-Wide Approaches to Studying Yeast Chromatin Modifications
Dustin E. Schones, Kairong Cui, and Suresh Cuddapah
5. Absolute and Relative Quantification of mRNA Expression (Transcript Analysis)
Andrew Hayes, Bharat M. Rash, and Leo A.H. Zeef
6. Enrichment of Unstable Non-Coding RNAs and Their Genome-Wide Identification
Helen Neil and Alain Jacquier
7. Genome-Wide Transcriptome Analysis in Yeast Using High-Density Tiling Arrays
Lior David, Sandra Clauder-Münster, and Lars M. Steinmetz
8. RNA Sequencing
Karl Waern, Ugrappa Nagalakshmi, and Michael Snyder
9. Polyadenylation State Microarray (PASTA) Analysis
Traude H Beilharz and Thomas Preiss
10. Enabling Technologies for Yeast Proteome Analysis
Johanna Rees and Kathryn Lilley
11. Protein Turnover Methods in Single-Celled Organisms: Dynamic SILAC
Amy J. Claydon and Robert J. Beynon
12. Protein-Protein Interactions and Networks: Forward and Reverse Edgetics
Benoit Charloteaux, Quan Zhong, Matija Dreze, Michael E. Cusick, David E. Hill, and Marc Vidal
13. Use of Proteome Arrays to Globally Identify Substrates for E3 Ubiquitin Ligases
Avinash Persaud and Daniela Rotin
14. Fit for Purpose Quenching and Extraction Protocols for Metabolic Profiling of Yeast Using Chromatography-Mass Spectrometry Platforms
Catherine L. Winder and Warwick B. Dunn
15. The Automated Cell: Compound and Environment Screening System (ACCESS) for Chemogenomic Screening
Michael Proctor, Malene L. Urbanus, Eula L. Fung, Daniel F. Jaramillo, Ronald W. Davis, Corey Nislow, and Guri Giaever
16. Competition Experiments Coupled with High-Throughput Analyses for Functional Genomics Studies in Yeast
Daniela Delneri
17. Fluorescence Fluctuation Spectroscopy and Imaging Methods for Examination of Dynamic Protein Interactions in Yeast
Brian D. Slaughter, Jay R. Unruh, and Rong Li
18. Nutritional Control of Cell Growth Via TOR Signaling in Budding Yeast
Yuehua Wei and X.F. Steven Zheng
Part III: Computational Systems Biology: Computational Studies and Analyses
19. Computational Yeast Systems Biology: A Case Study for the MAP Kinase Cascade
Edda Klipp
20. Standards, Tools, and Databases for the Analysis of Yeast 'Omics Data
Axel Kowald and Christoph Wierling
21. A Computational Method to Search for DNA Structural Motifs in Functional Genomic Elements
Stephen C.J. Parker, Aaron Harlap, and Thomas D. Tullius
22. High Throughput Analyses and Curation of Protein Interactions in Yeast
Shoshana J. Wodak, Jim Vl
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