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R-Loops: Methods and Protocols
Hardcover
Series: Methods in Molecular Biology, Book 2528
Technology & EngineeringBiologyChemistry
ISBN13: 9781071624760
Publisher: Humana Pr
Published: Jun 16 2022
Pages: 470
Weight: 2.32
Height: 1.06 Width: 7.00 Depth: 10.00
Language: English
1. Direct R-Loop Visualization on Genomic DNA by Native Automated Electron Microscopy
Henriette Stoy, Joel Luethi, Fabienne Roessler, Johannes Riemann, Andres Kaech, and Massimo Lopes
2. Detection of R-Loop Structures by Immunofluorescence Using the S9.6 Monoclonal Antibody
Konstantina Skourti-Stathaki
3. R-Loop Detection in Bacteria
Émilie Vlachos-Breton and Marc Drolet
4. Detection of R-Loops by In Vivo and In Vitro Cytosine Deamination in Saccharomyces cerevisiae
Juan C. Cañas, Andrés Aguilera, and Belén Gómez-González
5. Identification of RNA-DNA Hybrids Associated with R-Loops at the IgH Switch Sequence in Activated B Cells
Junghyun Lim, Brice Laffleur, Uttiya Basu, and Kefei Yu
6. Locus-Specific Analysis of Replication Dynamics and Detection of DNA: RNA Hybrids by Immuno Electron Microscopy
Henriette Stoy, Kevin Lang, Houra Merrikh, and Massimo Lopes
7. RNase H1, the Gold Standard for R-Loop Detection
Susana M. Cerritelli, Kiran Sakhuja, and Robert J. Crouch
8. RNase H1 Hybrid-Binding Domain-Based Tools for Cellular Biology Studies of DNA-RNA Hybrids in Mammalian Cells
Sónia Silva, Cristina Guillén-Mendoza, and Andrés Aguilera
9. Detection and Quantification of RNA Modifications on RNA/DNA Hybrids Using SID-UPLC-MS/MS
Marta Starczak, Abdulkadir Abakir, Alexey Ruzov, and Daniel Gackowski
10. DNA: RNA Hybrids at Telomeres in Budding Yeast
Carolin B. Wagner and Brian Luke
11. Detection of TERRA R-Loops at Human Telomeres
Galina Glousker, Rita Valador Fernandes, Marianna Feretzaki, and Joachim Lingner
12. R-Loops and Mitochondrial DNA Metabolism
Ian J. Holt
13. Highly-Purified Top1-Bound DNA Fragments
Jessica Marinello and Giovanni Capranico
14. R-Loop Immunoprecipitation: A Method to Detect R-Loop Interacting Factors In Vivo
Chiara Beghè and Natalia Gromak
15. Studies on Protein-RNA: DNA Hybrid Interactions by Microscale Thermophoresis (MST)
Miaomiao Li, Arne Klungland, and Bj rn Dalhus
16. Studying R-Loop Recognizing Proteins Using Single-Molecule DNA Curtain Technique and Electrophoretic Mobility Shift Assay
Na Young Cheon and Ja Yil Lee
17. Immunostaining and Protein Pull-Down of Methyl-5-Cytosine-Marked RNA: DNA Hybrids
Haibo Yang and Li
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