Sign-In
Cart
Hydration Structures of Proteins: Atomic Details
Hardcover
Series: Soft and Biological Matter
ISBN13: 9784431569176
Publisher: Springer Nature
Published: Oct 26 2021
Pages: 309
Weight: 1.40
Height: 0.75 Width: 6.14 Depth: 9.21
Language: English
1. Introduction
1.1 Water: the cradle of life
1.2 Structure and interaction of water molecules
1.2.1 Structure of water molecules
1.2.2 Interactions between water molecules
1.2.3 Hydrogen bond between water molecules
1.3 Phase diagram of water
1.3.1 Three phases of water
1.3.2 Hexagonal ice and amorphous ice
1.4 Properties of liquid water1.4.1 Unusual physical properties
1.4.2 Brownian motion in liquid water
1.4.3 Structure of liquid water
1.5 Hydration
1.5.1 Solvation
1.5.2 Hydration
1.5.3 Hydration of hydrophobic molecules
1.6 Hydration structures of proteins
1.6.1 Proteins
1.6.2 Hydration structures of proteins
1.7 Scope of this monograph
References
2. Biophysical methods to visualize hydration structures of proteins
2.1 Introduction
2.2 X-ray crystallography at cryogenic temperatures
2.2.1 Outline
2.2.2 Crystallographic structure refinement
2.2.3 Difference Fourier map
2.2.4 X-ray crystallography at cryogenic temperatures
2.3 Cryogenic electron microscopy
2.3.1 Outline2.3.2 Specimen preparation and image collection
2.3.3 Image processing and single-particle analysis
2.4 Time-resolved fluorescence measurement2.4.1 Outline
2.4.2 Up-conversion method
2.5 Molecular dynamic simulation2.5.1 Outline
2.5.2 Force field
References
3. Hydration structures inside proteins
3.1 Introduction
3.2 Water molecules inside proteins
3.2.1 Tightly-bound water molecules3.2.2 Water molecules confined inside proteins
3.3 Hydration water molecules as glue in protein complexes
3.3.1 Hydration at the subunit interface of a protein complex
3.3.2 Hydration sites conserved in protein families
3.4 Hydration water molecules as lubricant at protein interface
3.5 Hydration water molecules in the ligand-binding sites
References
4. Hydration layer around proteins
4.1 Introduction
4.2 Hydration layer
4.2.1 First- and second-layer classes
4.2.2 Distance distribution and positional fluctuation
4.2.3 Monolayer hydration
4.2.4 Contact class
4.3 Local patterns in protein hydration
4.3.1 Patterns on hydrophilic surfaces
4.3.2 Hydration on hydrophobic surfaces4.3.3 Tetrahedral hydrogen bond geometry of water molecules
4.4 Hydration structures in molecular dynamics simulation4.4.1 Computation of solvent density
4.4.2 Characteristic of solvent density
References
5. Structural characteristics in local hydration
5.1 Introduction
5.2 Empirical hydration distribution around polar atoms
5.2.1 Construction5.2.2 Distribution around polar protein atoms
5.2.3 Hydration of aromatic acceptors
5.2.4 Characteristics and benefits of the empirical hydration distributions.5.2.5 Tetrahedral hydrogen bond geometry
5.3 Assessment of force fields of polar protein atoms
5.3.1 Models of water molecule suitable for simulation
5.3.2 Hydration of deprotonated polar atoms in sp2-hybridization
5.3.3 Hydration of protonated nitrogen atoms in sp2- or sp3- hybridization
5.3.4 H
Also in
Biology
The Age of Living Machines: How Biology Will Build the Next Technology Revolution
Hockfield, Susan
Paperback
Entangled Life: How Fungi Make Our Worlds, Change Our Minds & Shape Our Futures
Sheldrake, Merlin
Paperback
History by a Hair: Thomas Jefferson, Sally Hemings & Solving a 200-Year-Old Mystery
Kurin, Richard
Hardcover
Hidden Creatures: Luscious Leeches, Bashful Botflies, and the Wondrous, History-Shaping World of Parasites
Martins, Dino
Hardcover
The World Beneath Our Feet: The Hidden Life of Soil and Why It Matters to Us All
Ashwood, Frank
Hardcover
Beyond Inheritance: Our Ever-Mutating Cells and a New Understanding of Health
Khamsi, Roxanne
Hardcover
National Geographic the Photo Ark: One Man's Quest to Document the World's Animals
Sartore, Joel
Chadwick, Douglas H.
Hardcover
Togetherness: Symbiosis and the Hidden Story of Life's Greatest Collaborations
Hooper, Rowan
Hardcover
Go Forth and Forage: A Guide to Foraging Over 50 of the Most Common Edible & Medicinal North American Mushrooms
Johnson, Whitney
Paperback
The Biology of Trauma: How the Body Holds Fear, Pain, and Overwhelm, and How to Heal It
Apigian, Aimie
Hardcover
Cells at Work! Picture Book 1: The Great Bacteria vs. White Blood Cell Battle!
Makimura, Kumi
Hardcover
The Power of Life: The Invention of Biology and the Revolutionary Science of Jean-Baptiste Lamarck
Riskin, Jessica
Hardcover
Princeton Review AP Biology Premium Prep, 29th Edition: 6 Practice Tests + Digital Practice Online + Content Review
The Princeton Review
Paperback
Ernst Haeckel's Art Forms in Nature: A Visual Masterpiece of the Natural World
Haeckel, Ernst
Hardcover
Fungi Decoded: Adventures in the Mycosphere--Encounters with Thirty Fungi
Bunyard, Britt A.
Paperback
Peterson Field Guide to Mushrooms of North America, Second Edition
Rohrer, Joseph R.
McKnight Ward, Kirsten
McKnight, Karl B.
Paperback
The Whole Truth: The Hidden Agendas Behind Decades of Health Misinformation--And What to Do about It
Campbell, T. Colin
Campbell, Nelson
Hardcover
Night Magic: Adventures Among Glowworms, Moon Gardens, and Other Marvels of the Dark
Henion, Leigh Ann
Hardcover
Bioinspired: How Nature Made Us Modern, Drives Today's Technological Innovation, and Inspires a Future Worth Inventing
Stier, Samuel Cord
Hardcover
Forbidden Facts: Government Deceit & Suppression about Brain Damage from Childhood Vaccines
de Becker, Gavin
Hardcover
Food Intelligence: The Science of How Food Both Nourishes and Harms Us
Hall, Kevin, PhD
Belluz, Julia
Hardcover
The Molecular Diet: Precision Nutrition to Repair Your Genes and Supercharge Your Health
Gubler, Dan
Hardcover
Psilocybin: Magic Mushroom Grower's Guide: A Handbook for Psilocybin Enthusiasts
Oss, O. T.
Oeric, O. N.
Paperback
All That Remains: A Renowned Forensic Scientist on Death, Mortality, and Solving Crimes
Black, Sue
Paperback
A Year with the Seals: Unlocking the Secrets of the Sea's Most Charismatic and Controversial Creatures
Morris, Alix
Hardcover
VAX Facts: What to Consider Before Vaccinating at All Ages & Stages of Life
Thomas, Paul
Hoover, Deedee
Paperback
The Big One: How We Must Prepare for Future Deadly Pandemics
Olshaker, Mark
Osterholm, Michael T.
Hardcover
True Hallucinations: Being an Account of the Author's Extraordinary Adventures in the Devil's Paradis
McKenna, Terence
Paperback
Fungi of Temperate Europe: Keys to the Basidiomycotes
Petersen, Jens H.
Frøslev, Tobias G.
Læssøe, Thomas
Hardcover
The Aesthetic Revolution: Embracing Vanity and the Future of Fitness to Unlock Your Healthiest Self
Israetel, Mike
Hardcover
Mushrooms of the Redwood Coast: A Comprehensive Guide to the Fungi of Coastal Northern California
Schwarz, Christian
Siegel, Noah
Paperback
The Gut-Brain Paradox: Improve Your Mood, Clear Brain Fog, and Reverse Disease by Healing Your Microbiome
Gundry MD, Steven R.
Hardcover
Psilocybin Mushrooms: A Comprehensive Guide to Growing and Using Psychedelic Mushrooms
Madden, Michael
Paperback
The Art and Science of Foodpairing: 10,000 Flavour Matches That Will Transform the Way You Eat
Lahousse, Bernard
Langenbick, Johan
Coucquyt, Peter
Hardcover
Entangled Life: How Fungi Make Our Worlds, Change Our Minds & Shape Our Futures
Sheldrake, Merlin
Hardcover
The Little Book of Mushrooms: An Illustrated Guide to the Extraordinary Power of Mushrooms
Dorr, Alex
Hardcover
Mushrooming: An Illustrated Guide to the Fantastic, Delicious, Deadly, and Strange World of Fungi
Borsato, Diane
Hardcover
Regents Exams and Answers: Life Science: Biology, Second Edition
Barron's Educational Series
Paperback
The Contagion Myth: Why Viruses (Including Coronavirus) Are Not the Cause of Disease
Fallon Morell, Sally
Cowan, Thomas S.
Hardcover
Mushrooms of Cascadia, Second Edition: An Illustrated Key to the Fungi of the Pacific Northwest
Beug, Michael
Paperback
The Mushroom Hunters: A Hidden World of Food, Money, and (Mostly Legal) Adventure
Cook, Langdon
Paperback
From These Lands: Sharing Our Natural and Cultural Heritage
National Museum of Natural History
Hardcover
How to Win Friends and Influence Fungi: Collected Quirks of Science, Tech, Engineering, and Math from Nerd Nite
Balakrishnan, Chris
Wasowski, Matt
Paperback
Human Errors: A Panorama of Our Glitches, from Pointless Bones to Broken Genes
Lents, Nathan H.
Paperback
Superconvergence: How the Genetics, Biotech, and AI Revolutions Will Transform Our Lives, Work, and World
Metzl, Jamie
Paperback
Field Guide to Wild Mushrooms of Pennsylvania and the Mid-Atlantic: Revised and Expanded Edition
Russell, Bill
Paperback
The Life Machines: How Taking Care of Your Mitochondria Can Transform Your Health
Mochly-Rosen, Daria
Rosen, Emanuel
Hardcover
Gut Check: Unleash the Power of Your Microbiome to Reverse Disease and Transform Your Mental, Physical, and Emotional Health
Gundry MD, Steven R.
Hardcover
The Ocean's Menagerie: How Earth's Strangest Creatures Reshape the Rules of Life
Harvell, Drew
Hardcover
Field Notes from a Fungi Forager: An Illustrated Journey Through the World of Pacific Northwest Mushrooms
Rodriguez, Ashley
Hardcover
The Mycocultural Revolution: Transforming Our World with Mushrooms, Lichens, and Other Fungi
McCoy, Peter
Hardcover
National Audubon Society Wildflowers of North America: The Complete Identification Reference to Wildflowers--With Full-Color Photographs; Updated Rang
National Audubon Society
Hardcover
The Pale Blue Data Point: An Earth-Based Perspective on the Search for Alien Life
Willis, Jon
Hardcover
The Serengeti Rules: The Quest to Discover How Life Works and Why It Matters
Carroll, Sean B.
Paperback