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Capturing Chromosome Conformation: Methods and Protocols
Paperback
Series: Methods in Molecular Biology, Book 2157
ISBN13: 9781071606667
Publisher: Humana
Published: Aug 21 2021
Pages: 322
Weight: 1.29
Height: 0.70 Width: 7.00 Depth: 10.00
Language: English
1. Capturing Chromosome Conformation
Michel Pucéat
2. The Chromosome Conformation Capture (3C) in Drosophila melanogaster
Federica Lo Sardo
3. 4C-Seq: Interrogating Chromatin Looping with Circular Chromosome Conformation Capture
Nezih Karasu and Tom Sexton
4. Analysis, Modeling, and Visualization of Chromosome Conformation Capture Experiments
Marco Di Stefano, David Castillo, François Serra, Irene Farabella, Mike N. Goodstadt, and Marc A. Marti-Renom
5. Targeted DNase Hi-C
Zhijun Duan
6. C-HiC: A High Resolution Method for Unbiased Chromatin Conformation Capture Targeting Small Locus
Jérôme D. Robin
7. Computational Analysis of Hi-C Data
Mattia Forcato and Silvio Bicciato
8. Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP
Xue Qing David Wang, Christopher J.F. Cameron, Dana Segal, Denis Paquette, Mathieu Blanchette, and Josée Dostie
9. Single-Cell DamID to Capture Contacts between DNA and the Nuclear Lamina in Individual Mammalian Cells
Kim L. de Luca and Jop Kind
10. Formaldehyde-Mediated Snapshot of Nuclear Architecture
Federica Lucini, Andrea Bianchi, and Chiara Lanzuolo
11. Visualization of Chromatin Dynamics by Live Cell Microscopy Using CRISPR/Cas9 Gene Editing and ANCHOR Labeling
Ezio T. Fok, Stephanie Fanucchi, Kerstin Bystricky, and Musa M. Mhlanga
12. Preparing Map of Chromosome Territories Distribution Frequency
Paulina Nastaly and Paolo Maiuri
13. Higher-Order Chromatin Organization Using 3D DNA Fluorescent In Situ Hybridization
Quentin Szabo, Giacomo Cavalli, and Frédéric Bantignies
14. 3D Immuno-DNA Fluorescence In Situ Hybridization (FISH) for Detection of HIV-1 and Cellular Genes in Primary CD4+ T Cells
Bojana Lucic, Julia Wegner, Mia Stanic, Katharina Laurence Jost, and Marina Lusic
15. Visualization of Nuclear and Cytoplasmic Long Noncoding RNAs at Single-Cell Level by RNA-FISH
Tiziana Santini, Julie Martone, and Monica Ballarino
16. 3D COMBO chrRNA-DNA-Immuno FISH
Federica Marasca, Alice Cortesi, and Beatrice Bodega
17. An Algorithm for the Analysis of the 3D Spatial Organization of the Genome
Francesco Gregoretti, Alice Cortesi, Gennaro Oliva, Beatrice Bodega, and Laura Antonelli
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