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Bioconductor Case Studies
Paperback
Series: Use R!
Medical ReferenceAnatomy & PhysiologyGeneral Computers
ISBN13: 9780387772394
Publisher: Springer
Published: Aug 15 2008
Pages: 284
Weight: 0.85
Height: 0.70 Width: 6.10 Depth: 9.10
Language: English
Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. In this volume, the authors present a collection of cases to apply Bioconductor tools in the analysis of microarray gene expression data. Topics covered include: (1) import and preprocessing of data from various sources; (2) statistical modeling of differential gene expression; (3) biological metadata; (4) application of graphs and graph rendering; (5) machine learning for clustering and classification problems; (6) gene set enrichment analysis.
Each chapter of this book describes an analysis of real data using hands-on example driven approaches. Short exercises help in the learning process and invite more advanced considerations of key topics. The book is a dynamic document. All the code shown can be executed on a local computer, and readers are able to reproduce every computation, figure, and table.
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