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Yeast Genetic Networks: Methods and Protocols
Paperback
Series: Methods in Molecular Biology, Book 734
BiologyGeneral ScienceGenetics
ISBN13: 9781493957774
Publisher: Humana Pr
Published: Aug 23 2016
Pages: 344
Weight: 1.37
Height: 0.74 Width: 7.00 Depth: 10.00
Language: English
Part I Experimental Analysis of Signalling in Gene Regulatory Networks
1. Global Estimation of mRNA Stability in Yeast
Julia MarÃn-Navarro, Alexandra Jauhiainen, JoaquÃn Moreno, Paula Alepuz, José E. Pérez-OrtÃn, and Per Sunnerhagen
2. Genomic-wide Methods to Evaluate Transcription Rates in Yeast
José GarcÃa-MartÃnez, Vicent Pelechano, and José E. Pérez-OrtÃn
3. Construction of Cis-regulatory Input Functions of Yeast Promoters
Prasuna Ratna and Attila Becskei
4. Luminescence as a Continuous Real-Time Reporter of Promoter Activity in Yeast Undergoing Respiratory Oscillations or Cell Division Rhythms
J. Brian Robertson and Carl Hirschie Johnson
5. Linearizer Gene Circuits with Negative Feedback Regulation
Dmitry Nevozhay, Rhys M. Adams, and Gábor Balázsi
6. Measuring In vivo Signaling Kinetics in a Mitogen-activated Kinase Pathway using Dynamic Input Stimulation
Megan N. McClean, Pascal Hersen, and Sharad Ramanathan
Part II Mathematical Modelling of Network Behavior
7. Stochastic Analysis of Gene Expression
Xiu-Deng Zheng and Yi Tao
8. Studying Adaptation and Homeostatic Behaviors of Kinetic Networks by using MATLAB
Tormod Drengstig, Thomas Kjosmoen, and Peter Ruoff
9. Biochemical Systems Analysis of Signaling Pathways to Understand Fungal Pathogenicity
Jacqueline Garcia, Kellie J. Sims, John H. Schwacke, and Maurizio Del Poeta
10. Clustering Change Patterns Using Fourier Transformation with Time-course Gene Expression Data
Jaehee Kim
Part III Analysis of Network Behaviour by Quantitative Genetics
11. Finding Modulators of Stochasticity Levels by Quantitative Genetics
Steffen Fehrmann and Gaël Yvert
12. Functional Mapping of Expression Quantitative Trait Loci That Regulate Oscillatory Gene Expression
Arthur Berg, Ning Li, Chunfa Tong, Zhong Wang, Scott A. Berceli, and Rongling Wu
Part IV Examination of Network Behaviour in Related Yeast Species
13. Evolutionary Aspects of a Genetic Network: Studying the Lactose/Galactose Regulon of Kluyveromyces lactis
Alexander Anders and Karin D. Breunig
14. Analysis of Subtelomeric Silencing in Candida glabrata
Alejandro Juárez-Reyes, Alejandro De Las Peñas, and Irene Castaño
15. Morphological and Molecular Genetic Analysis of Epigenetic Switching of the Human Fungal Pathogen Candida albicans
Denes Hnisz, Michael Tscherner, and Karl Kuchler
16. Quantitation of Cellular Components in Cryptococcus neoformans for System Biology Analysis
Arpita Singh, Asfia Qureshi, and Maurizio Del Poeta
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