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Mass Spectrometry Data Analysis in Proteomics
Paperback
Series: Methods in Molecular Biology, Book 1007
ISBN13: 9781493959952
Publisher: Humana
Published: Aug 23 2016
Pages: 405
Weight: 1.58
Height: 0.85 Width: 7.00 Depth: 10.00
Language: English
1. Introduction to Mass Spectrometry-Based Proteomics
Rune Matthiesen and Jakob Bunkenborg
2. LC-MS Spectra Processing
Rune Matthiesen
3. Isotopic Distributions
Alan L. Rockwood and Magnus Palmblad
4. Retention Time Prediction and Protein Identification
Alex A. Henneman and Magnus Palmblad
5. Algorithms for Database Dependent Search of MSMS Data
Rune Matthiesen
6. Interpretation of Tandem Mass Spectra of Post-Translationally Modified Peptides
Jakob Bunkenborg and Rune Matthiesen
7. Improving Peptide Identification Using Empirical Scoring Systems
Robert J. Chalkley
8. Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry
Rune Matthiesen and Ana Sofia Carvalho
9. Computational Approaches to Selected Reaction Monitoring (SRM) Assay Design
Conrad Bessant and Jun Fan
10. Feature Selection and Machine Learning with Mass Spectrometry Data
Susmita Datta
11. Considerations in the Analysis of Hydrogen Exchange Mass Spectrometry Data
Thomas E. Wales, Michael J. Eggertson, and John R. Engen
12. Permethylated N-Glycan Analysis with Mass Spectrometry
Zhenxin Lin and David M. Lubman
13. Mass Spectrometry Methods for Studying Glycosylation in Cancer
Hugo Osório and Celso A. Reis
14. Proteomics Data Exchange and Storage: The Need for Common Standards and Public Repositories
Rafael C. Jiménez and Juan Antonio VizcaÃno
15. Tools for Protein Post Translational Modifications Analysis: FAK, A Case Study
Catarina Fonseca, Paula Voabil, Ana Sofia Carvalho, and Rune Matthiesen
16. Proteomic Strategies to Characterize Signaling Pathways
H.C. Harsha, Sneha M. Pinto, and Akhilesh Pandey
17. Simple Proteomics Data Analysis in the Object-Oriented PowerShell
Yassene Mohammed and Magnus Palmblad
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