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Marine Genomics: Methods and Protocols
Hardcover
Series: Methods in Molecular Biology, Book 2498
ISBN13: 9781071623121
Publisher: Humana Pr
Published: Jun 22 2022
Pages: 426
Weight: 2.17
Height: 1.00 Width: 7.00 Depth: 10.00
Language: English
1. Mitochondrial Genome of Non-Model Marine Metazoans by Next-Generation Sequencing (NGS)
Tullia I. Terraneo, Kiruthiga G. Mariappan, Zac Forsman, and Roberto Arrigoni
2. Genome-Wide DNA Methylation Protocol for Epigenetics Studies
Annalaura Mancia
3. Transcriptome Mining to Identify Genes of Interest: From Local Databases to Phylogenetic Inference
Daniele De Luca and Chiara Lauritano
4. Detecting Structural Variants and Associated Gene Presence-Absence Variation Phenomena in the Genomes of Marine Organisms
Marco Sollitto, Nathan J. Kenny, Samuele Greco, Carmen Federica Tucci, Andrew D. Calcino, and Marco Gerdol
5. From Sequences to Enzymes: Comparative Genomics to Study Evolutionary Conserved Protein Functions in Marine Microbes
Angelina Cordone, Alessandro Coppola, Angelica Severino, Monica Correggia, Matteo Selci, Antonio Cascone, Costantino Vetriani, and Donato Giovannelli
6. VenomFlow: An Automated Bioinformatic Pipeline for Identification of Disulfide-Rich Peptides from Venom Arsenals
Eleonora Achrak, Jennifer Ferd, Jessica Schulman, Trami Dang, Konstantinos Krampis, and Mande Holford
7. Population Genomics Analysis with RAD, Reprised: Stacks 2
Angel G. Rivera-Colón and Julian Catchen
8. A Metabarcoding Protocol to Analyze Coastal Planktic Communities Collected by Desalination Plant Filters: From Sampling to Bioinformatic Exploratory Analyses
Matteo Cecchetto, Andrea Di Cesare, Ester Eckert, Isabella Moro, Diego Fontaneto, and Stefano Schiaparelli
9. Barcoding of Antarctic Marine Invertebrates: From Field Sampling to Lab Procedures
Stefano Schiaparelli, Maria Chiara Alvaro, Matteo Cecchetto, and Alice Guzzi
10. DNA Barcoding Procedures for Taxonomical and Phylogenetic Studies in Marine Animals: Porifera as Case Study
Laura Núñez-Pons, Valerio Mazzella, Francesca Rispo, Jana Efremova, and Barbara Calcinai
11. Environmental DNA from Marine Waters and Substrates: Protocols for Sampling and eDNA Extraction
Dominique A. Cowart, Katherine R. Murphy, and C.-H. Christina Cheng
12. Metataxonomic Analysis of Bacterial Diversity Associated with Marine Organisms
Nadia Ruocco, Roberta Esposito, Valerio Zupo, and Maria Costantini
13. From Sequences to Enzymes: Heterologous Expression of Genes from Marine Microbes
Angelica Severino, Alessandro Coppola, Monica Correggia, Costantino Vetriani, Donato Giovannelli, and Angelina Cordone
14. Expression of Recombinant Cold-Adapted (Hemo)Globins from Marine Bacteria
Daniela Giordano and Cinzia Verde
15. Isolation of UV-Resistant Marine Bacteria
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