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Protein Supersecondary Structures
Paperback
Series: Methods in Molecular Biology, Book 932
ISBN13: 9781493962495
Publisher: Humana
Published: Aug 23 2016
Pages: 320
Weight: 1.30
Height: 0.71 Width: 7.00 Depth: 10.00
Language: English
1. Super-secondary Structure: A Historical Perspective
Michael G. Rossmann
Part I: Representation of Supersecondary Structure
2. Hierarchical Representation of Super-secondary Structures Using a Graph-theoretical Approach
Ina Koch and Annika Kreuchwig and Patrick May
3. Up, Down and Around: Identifying Recurrent Interactions Within and Between Super Secondary Structures in b-Propellers
S ren Thirup, Vikas Gupta and Esben M. Quistgaard 4. Structure Description and Identification using the Tableau Representation of Protein Folding Patterns Arun S. Konagurthu and Arthur M. Lesk Part II: Super-secondary Structure Prediction 5. Computational Prediction of Secondary and Supersecondary Structures Ke Chen and Lukasz Kurgan 6. A Survey of Machine Learning Methods for Secondary and Supersecondary Protein Structure Prediction Hui Kian Ho, Lei Zhang, Kotagiri Ramamohanarao, and Shawn Martin 7. Beyond Supersecondary Structure: The Global Properties of Protein Sequences S. Rackovsky 8. Creating Supersecondary Structures with BuildBeta Silvia Crivelli and Nelson Max 9. A Modular Perspective of Protein Structures; Application to Fragment Based Loop Modeling Narcis Fernandez-Fuentes and Andras Fiser 10. Residue-residue Contacts: Application to Analysis of Secondary Structure Interactions Vladimir Potapov, Marvin Edelman, Vladimir Sobolev Part III: Supersecondary Structure and Protein Folding 11. Super-secondary Structures and Modeling of Protein Folds Alexander V. Efimov 12. Computational Simulations of Protein Folding to Engineer Amino Acid Sequences to Encourage Desired Supersecondary Structure Formation Bernard S. Gerstman and Prem P. Chapagain 13. Protein Folding at Atomic Resolution: Analysis of Autonomously Folding Supersecondary Structure Motifs by Nuclear Magnetic Resonance Lorenzo Sborgi, Abhinav Verma, Mourad Sadqi, Eva de Alba, and Victor Muñoz 14. Artificial Supersecondary Structures Based on Aromatic Oligoamides Hai-Yu Hu and Chuan-Feng Chen Part IV: Other Applications of Supersecondary Structure to Protein Biology 15. Cross-b-sheet Super-secondary Structure in Amyloid Folds: Techniques for Detection and Characterization Raimon Sabaté and Salvador Ventura 16. Analyzing Oligomerization of Individual Transmembrane Helices and of Entire Membrane Proteins in E. coli: A Hitchhiker s Guide to GALLEX Florian Cymer, Charles R. Sanders, and Dirk Schneider 17. Super-secondary Structure Prediction of Transmembrane Beta-Barrel Proteins Van Du T Tran, Philippe Chassignet and Jean-Marc Steyaert 18. Functional Structural Motifs for Protein-ligand, Protein-protein and Protein-nucleic Acid Interactions and their Connection to Supersecondary Structures Akira R. Kinjo and Haruki Nakamura
4. Structure Description and Identification using the Tableau Representation of Protein Folding Patterns
Arun S. Konagurthu and Arthur M. Lesk
Part II: Super-secondary Structure Prediction
5. Computational Prediction of Secondary and Supersecondary Structures
Ke Chen and Lukasz Kurgan
6. A Survey of Machine Learning Methods for Secondary and Supersecondary Protein Structure Prediction
Hui Kian Ho, Lei Zhang, Kotagiri Ramamohanarao, and Shawn Martin 7. Beyond Supersecondary Structure: The Global Properties of Protein Sequences S. Rackovsky 8. Creating Supersecondary Structures with BuildBeta Silvia Crivelli and Nelson Max 9. A Modular Perspective of P
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