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Evolutionary Genomics: Statistical and Computational Methods, Volume 2
Paperback
Series: Methods in Molecular Biology, Book 856
ISBN13: 9781493960422
Publisher: Humana Pr
Published: Aug 23 2016
Pages: 556
Weight: 2.17
Height: 1.16 Width: 7.00 Depth: 10.00
Language: English
Part I: Phylogenomics
1. Tangled Trees: The Challenge of Inferring Species Trees from Coalescent and Non-Coalescent Genes
Christian Anderson, Liang Liu, Dennis Pearl, and Scott V. Edwards
2. Modeling Gene Family Evolution and Reconciling Phylogenetic Discord
Gergely J Szöllősi and Vincent Daubin
3. Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life
Pere Puigbò, Yuri I. Wolf, and Eugene V. Koonin
4. Philosophy and Evolution: Minding the Gap Between Evolutionary Patterns and Tree-Like Patterns
Eric Bapteste, Frederic Bouchard, and Richard M. Burian
Part II: Natural Selection, Recombination, and Innovation in Genomic Sequences
5. Selection on the Protein Coding Genome
Carolin Kosiol and Maria Anisimova
6. Methods to Detect Selection on Non-Coding DNA
Ying Zhen and Peter Andolfatto
7. The Origin and Evolution of New Genes
Margarida Cardoso-Moreira and Manyuan Long
8. Evolution of Protein Domain Architectures
Kristoffer Forslund and Erik L.L. Sonnhammer
9. Estimating Recombination Rates from Genetic Variation in Humans
Adam Auton and Gil McVean
10. Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces
Sergei L. Kosakovsky Pond, Ben Murrell, and Art F.Y. Poon
Part III: Population Genomics
11. Association Mapping and Disease: Evolutionary Perspectives
S ren Besenbacher, Thomas Mailund, and Mikkel H. Schierup
12. Ancestral Population Genomics
Julien Y. Dutheil and Asger Hobolth
13. Non-Redundant Representation of Ancestral Recombinations Graphs
Laxmi Parida
Part IV: The -omics
14. Using Genomic Tools to Study Regulatory Evolution
Yoav Gilad
15. Characterization and Evolutionary Analysis of Protein-Protein Interaction Networks
Gabriel Musso, Andrew Emili, and Zhaolei Zhang
16. Statistical Methods in Metabolomics
Alexander Korman, Amy Oh, Alexander Raskind, and David Banks
17. Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN
Daniel H. Huson and Suparna Mitra
18. Analyzing Epigenome Data in Context of Genome Evolution and Human Diseases
Lars Feuerbach, Konstantin Halachev, Yassen Assenov, Fabian Müller, Christoph Bock, and Thomas Lengauer
19. Genetical Genomics for Evolutionary Studies
Pjotr Prins, Geert Smant, and Ritsert C. Jansen
Part V: Handling Genomic Data: Resources and Computation
20. Genomics Data Resources: Frameworks and Standards
Mark D. Wilkinson
21. Sharing Programming Resources Between Bio* Projects through Remote Procedure Call and Native Call Stack Strategies
Pjotr Prins, Naohisa Goto, Andrew Yates, Laurent Gautier, Scooter Willis, Christopher Fields, and Toshiaki Katayama
22. Scalable Computing for Evolutionary Genomics
Pjotr Prins, Dominique Belhachemi, Steffen Möller, and Geert Smant
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